PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00285g00820.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 584aa    MW: 62986.8 Da    PI: 6.9477
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00285g00820.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31232289260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  Peaxi162Scf00285g00820.1 232 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 289
                               8****************************************.***************85 PP
2WRKY106.31.6e-33407465159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+a+dpk+v++tYeg+Hnh+
  Peaxi162Scf00285g00820.1 407 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERAAHDPKAVITTYEGKHNHD 465
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-26222290IPR003657WRKY domain
PROSITE profilePS5081122.527226290IPR003657WRKY domain
SuperFamilySSF1182902.09E-24228290IPR003657WRKY domain
SMARTSM007749.2E-33231289IPR003657WRKY domain
PfamPF031069.0E-24232288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37392467IPR003657WRKY domain
SuperFamilySSF1182902.22E-29399467IPR003657WRKY domain
PROSITE profilePS5081138.572402467IPR003657WRKY domain
SMARTSM007743.3E-39407466IPR003657WRKY domain
PfamPF031063.8E-26408465IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MEDSQHLRNG SSAAIDGGFS SVSGGSNGGA KYKLMTPAKL PITRSTCITI PPGLSPSSFL  60
ESPVLLSNIK AEPSPTTGSF SKLQPVQGSG RNAAFLLTRG SCSSNSYGER NSSGFEFKLA  120
GGSSSASGSF ATEHVTSTGL DQQQIEPLKE VQDQSHPQLL TPSSLANHET ATSKEQSIAV  180
PINVDASSEE ESLSIPINAD SMNLRGQSNS SMQESHVDHK DVSSVTAERS TDDGYNWRKY  240
GQKLVKGSEF PRSYYKCTYP NCEVKKIFER SPEGQITEIV YKGSHDHPKP QLSRRFTPGA  300
LMSIQEDKCE KEACFRGQGV FVEDKFNTNA QSSKIEPSST PVSPQEGDTD GLEGAVSQMQ  360
GSNNDMDEDD PFVKRRKMDG GMDITPVIKP IREPRVVVQT VSEVDILDDG YRWRKYGQKV  420
VRGNPNPRSY YKCTNAGCPV RKHVERAAHD PKAVITTYEG KHNHDVPTAR NNSHEMAGST  480
PATGSSRIRA GKTDSLSLDL GVGNGYGVEN GNNGQFQTVH GQVQISHSGM MVPAAVAARY  540
GVVNSGMSRF GAIDNHVQGP GFETLPLQPS TQCRQNYGSI LLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37232467877Probable WRKY transcription factor 4
2lex_A2e-37232467877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111290.0AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082104.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-147WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM1C0Z40.0M1C0Z4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000574090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-146WRKY family protein