PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00268g00046.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 278aa    MW: 30870.1 Da    PI: 8.6178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00268g00046.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-101451148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd++l+++++ +G g          + R++k+c++rw +yl
  Peaxi162Scf00268g00046.1 14 KGAWTKEEDQRLINYIRAHGEG----------LLRCGKSCRLRWINYL 51
                              79******************99..........689***********97 PP
2Myb_DNA-binding57.33.6e-1857101147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg++T+eEd+l+++++ +lG++ W+ Ia +++ gRt++++k++w+++
  Peaxi162Scf00268g00046.1  57 RGNFTEEEDDLIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 101
                               89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.178951IPR017930Myb domain
SuperFamilySSF466892.66E-251398IPR009057Homeodomain-like
SMARTSM007171.2E-61353IPR001005SANT/Myb domain
PfamPF002493.3E-81451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-151558IPR009057Homeodomain-like
PROSITE profilePS5129428.02752106IPR017930Myb domain
SMARTSM007171.8E-1756104IPR001005SANT/Myb domain
PfamPF002491.2E-1657101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2859107IPR009057Homeodomain-like
CDDcd001673.02E-1259102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR AHGEGLLRCG KSCRLRWINY LRPDLKRGNF  60
TEEEDDLIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISHG IDPQTHRPLN  120
AAANPAATTT ITTNTTKNIC MDFRNNVDQK PHINIINKTN ATDSSNNETK CSSVTTEETQ  180
PLELPKKNTQ VMINLELSIG LPFHAKTDHI YSSNSAESTA PYNFLAAAAA PPPTVAAVPV  240
VAMAELVAET ACLCWQIGFQ GGQSCGKCKT TTGFYRFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28141067108B-MYB
1h8a_C7e-281310626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754456e-38HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485029.11e-147PREDICTED: myb-related protein 330-like
SwissprotP813951e-94MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A1S4B8311e-146A0A1S4B831_TOBAC; myb-related protein 330-like
STRINGXP_009600359.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-81myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]