PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00263g00072.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Dof
Protein Properties Length: 276aa    MW: 31200.2 Da    PI: 4.2081
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00263g00072.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.56.1e-382180362
                    zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                              e+a +cprC stntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rk+++s+
  Peaxi162Scf00263g00072.1 21 EQAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKSRRSR 80
                              57789***************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-27873IPR003851Zinc finger, Dof-type
PfamPF027011.5E-322278IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6862478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLGYPSRPMI MMERKRKSNF EQAPNCPRCA STNTKFCYYN NYSLSQPRYF CKACRRYWTK  60
GGSLRNVPVG GGCRKSRRSR SARKDDNTLQ TPSPDLSGNE AAGADIDLAD VFTKYLNQGA  120
ANNIDHQDIL QESPLTDQDY SSLGASYDNS PSSDSLIPSS FETDSQLDET IIMGNYNQDY  180
PCGFLQEEQL HEGTQDFLDL DPSFLEMQAL LGDGMMGQAE EFDYNASFTW QPMMQFQDFG  240
TTLEDDQLKT STEYLASDNN NCSSFDLPSY ENFTRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-85HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266430.11e-155PREDICTED: dof zinc finger protein DOF3.2-like
SwissprotP683492e-39DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLA0A314L0R91e-154A0A314L0R9_NICAT; Dof zinc finger protein dof3.5
STRINGXP_009628285.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.17e-38Dof family protein