PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00253g00321.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 538aa    MW: 60352.2 Da    PI: 4.7019
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00253g00321.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.31.5e-53101371128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               l+pGfrFhPtdeelv +yL++kv gk+l++ ++i+++diykvePwdLp  +++++++ ewyfFs  dkky +g+r+nrat++gyW
  Peaxi162Scf00253g00321.1  10 LAPGFRFHPTDEELVRYYLRRKVCGKPLRI-DAISDIDIYKVEPWDLPgmSRLNTRDLEWYFFSMLDKKYGNGSRTNRATERGYW 93 
                               579***************************.99***************6337777888*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k+tgkd+++++ k+++v +kktLv+++grapkg++t+Wvmhey+l
  Peaxi162Scf00253g00321.1  94 KTTGKDRAIHH-KSQVVAMKKTLVYHSGRAPKGQRTNWVMHEYKL 137
                               ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-619160IPR003441NAC domain
PROSITE profilePS5100557.96410160IPR003441NAC domain
PfamPF023653.2E-2712137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MESRGSSKLL APGFRFHPTD EELVRYYLRR KVCGKPLRID AISDIDIYKV EPWDLPGMSR  60
LNTRDLEWYF FSMLDKKYGN GSRTNRATER GYWKTTGKDR AIHHKSQVVA MKKTLVYHSG  120
RAPKGQRTNW VMHEYKLVDE ELDKAGISQD AFVLCRVFQK SGAGPKNGEK YGAPFVEEEW  180
EDDELQMVPK PETTNEVEYG DIYLDGYELE QILGTETPVD SVPTHMNCSD GKSGTYCEEA  240
NDCSEDAQKW LQQQNELKPF DPAVQYTANN PLEHEYIGES GKRLNSGFVD YLLNGPLDDS  300
SDALQFNDGA FLEANDLSNP VEVDNSGYDM FEEYLTYFDA NDDFQNMGFD GFDPSVLIGN  360
DGHVSDQASL LEKNIGEVAQ QVTAPSEQLA EHKNTIASSS MEKPTKFVTA DDQYQFMKRA  420
SQMLGSIPAP PAFASEFPTK DAARHLNSMP HSANSVRVTA GVIQIRNNWS LGKHGYYNII  480
LSFGLCQGSD SSANPESVAN SSPGKATSMV SRGWFSYLFF WVLILSTSFK IGTLICAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-461016617171NO APICAL MERISTEM PROTEIN
1ut4_B2e-461016617171NO APICAL MERISTEM PROTEIN
1ut7_A2e-461016617171NO APICAL MERISTEM PROTEIN
1ut7_B2e-461016617171NO APICAL MERISTEM PROTEIN
3swm_A2e-461016620174NAC domain-containing protein 19
3swm_B2e-461016620174NAC domain-containing protein 19
3swm_C2e-461016620174NAC domain-containing protein 19
3swm_D2e-461016620174NAC domain-containing protein 19
3swp_A2e-461016620174NAC domain-containing protein 19
3swp_B2e-461016620174NAC domain-containing protein 19
3swp_C2e-461016620174NAC domain-containing protein 19
3swp_D2e-461016620174NAC domain-containing protein 19
4dul_A2e-461016617171NAC domain-containing protein 19
4dul_B2e-461016617171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5098720.0AF509872.1 Petunia x hybrida nam-like protein 9 (NH9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599412.10.0PREDICTED: NAC domain-containing protein 53-like isoform X1
TrEMBLQ8LRL60.0Q8LRL6_PETHY; Nam-like protein 9
STRINGXP_009599412.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-146NAC domain containing protein 2