PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00250g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 114aa MW: 13270.2 Da PI: 10.5185 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.5 | 1.8e-06 | 24 | 66 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 R++i+ + +L +l+P+a +++s+ +s Le+A +YIk+Lq Peaxi162Scf00250g00016.1 24 RNQIKPLYLKLNSLVPHA-QQYSTDvVSLPNQLEEAANYIKKLQ 66 899**************8.6999999*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.87E-7 | 24 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-5 | 24 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 114 aa Download sequence Send to blast |
MELQQCNNRA SSSLSKADRK TIERNQIKPL YLKLNSLVPH AQQYSTDVVS LPNQLEEAAN 60 YIKKLQIHLE RMRLRKEGLT RGHDQISSGR SSNRRIKEWL SLPHIEIHHH GIQL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619774.1 | 2e-32 | PREDICTED: uncharacterized protein LOC104111721 | ||||
Refseq | XP_016503357.1 | 2e-32 | PREDICTED: uncharacterized protein LOC107821437 | ||||
Swissprot | F4JIJ7 | 1e-13 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A1S4CQ28 | 5e-31 | A0A1S4CQ28_TOBAC; uncharacterized protein LOC107821437 | ||||
STRING | XP_009619774.1 | 8e-32 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5105 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 6e-16 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|