PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00238g01417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 21447.5 Da PI: 7.4266 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128 | 4.4e-40 | 25 | 125 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C aCk+lrrkC+++C++apyf a+q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdP+yG+vg+i++lq Peaxi162Scf00238g01417.1 25 PCGACKFLRRKCVRGCIFAPYFDADQgTAHFAAVHKVFGASNASKLLLRIPAHKRMDAVVTLCYEALARVRDPIYGCVGHIFTLQ 109 7*************************89********************************************************* PP DUF260 85 qqleqlkaelallkee 100 qq+ +l+aela+++++ Peaxi162Scf00238g01417.1 110 QQVVTLQAELAYVQAR 125 ************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.225 | 24 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-38 | 25 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MSSGCGGSGL CNNNVVAGGG AGGGPCGACK FLRRKCVRGC IFAPYFDADQ GTAHFAAVHK 60 VFGASNASKL LLRIPAHKRM DAVVTLCYEA LARVRDPIYG CVGHIFTLQQ QVVTLQAELA 120 YVQARLSTLH HLPIPPVPQP QSPSPTGLQS SSDLFCTSSS ISSSNMDPQL DIIGLNDVLD 180 QELDNCDLHT LAREFVSRHL PG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 22 | 119 | 8 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 22 | 119 | 8 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469456.1 | 1e-101 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O22132 | 3e-66 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A1S3ZYS9 | 1e-100 | A0A1S3ZYS9_TOBAC; LOB domain-containing protein 19-like | ||||
STRING | XP_009803301.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 8e-64 | LOB domain-containing protein 19 |