PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00234g00042.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 496aa    MW: 55702.5 Da    PI: 8.1125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00234g00042.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000185073123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                              + C+ Cgk Fs+   L  H+++ H
  Peaxi162Scf00234g00042.1 50 HICGECGKQFSSGKALGGHMSSaH 73
                              68******************9988 PP
2zf-C2H2140.00015112131221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                               +C +C k F++k +L  H+r
  Peaxi162Scf00234g00042.1 112 VCDICRKNFPSKKSLFGHMR 131
                               7******************8 PP
3zf-C2H216.22.9e-05359381123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC++C+ksF+++  L  H ++H
  Peaxi162Scf00234g00042.1 359 YKCNICDKSFTSHQALGGHRSSH 381
                               9***************9999998 PP
4zf-C2H211.20.0011444464121
                               EEETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                               +kC+ C+ksF++   L  H+r
  Peaxi162Scf00234g00042.1 444 HKCKVCDKSFPTGQALGGHQR 464
                               79**********999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.215073IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8065078IPR007087Zinc finger, C2H2
PfamPF139123.3E-85073IPR007087Zinc finger, C2H2
PROSITE patternPS0002805273IPR007087Zinc finger, C2H2
SMARTSM003550.0082111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432111138IPR007087Zinc finger, C2H2
SuperFamilySSF576676.78E-5112136No hitNo description
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
PfamPF139121.4E-6113135IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-10358381No hitNo description
Gene3DG3DSA:3.30.160.609.0E-4359381IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.074359386IPR007087Zinc finger, C2H2
SMARTSM003550.0043359381IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-8359382IPR007087Zinc finger, C2H2
PROSITE patternPS000280361381IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-10439466No hitNo description
SMARTSM003550.022444466IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-12444468IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221444471IPR007087Zinc finger, C2H2
PROSITE patternPS000280446466IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEAHQKNKKS SEKGVLKVKL KMPNIVKEVV DEEVEEAVDI REEIPKQKEH ICGECGKQFS  60
SGKALGGHMS SAHVQANNRD YMFKKQLKVS KGGFLEEGEV SELEKPYFGK IVCDICRKNF  120
PSKKSLFGHM RCHPDRNWRG MQRPNNKNVK NNHNHDDAAD DDNYFVNPQL VKELQETNLG  180
NNVLIGPATN IVVAPQVVDL KGCLTSWGVT DKRGRSAIIR NNRSRSNSIS SSEQKDLQDA  240
VHQLIRLVNG DNISPENRHK SEVLEAMCSN SVTPDAESNV KELPLSSLID KPKRKAVVVE  300
PTSDEENTRE ICYSGIESTD SKFKNSVVNK KRRVDQKGKD VSPIKKRFDF VNAVTPEKYK  360
CNICDKSFTS HQALGGHRSS HNKFKITIEN TVDHHQEVKS STTKVVPSIR GEEVTDVHQL  420
GEEINCNVEQ VGSNNMRGGS ENIHKCKVCD KSFPTGQALG GHQRCHWSNQ DESSQNVSKV  480
LDFDLNELPH VDDGYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591959.15e-98PREDICTED: uncharacterized protein LOC104088902
RefseqXP_016514970.15e-98PREDICTED: uncharacterized protein LOC107831697
RefseqXP_016546163.11e-95PREDICTED: uncharacterized protein LOC107846241
STRINGXP_009591959.12e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-18C2H2 family protein