PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00231g00729.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 523aa    MW: 56603 Da    PI: 6.5195
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00231g00729.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.3e-11161217155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Peaxi162Scf00231g00729.1 161 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 217
                               57*******************5444.2455535555.7799999*************98 PP
2AP247.25.5e-15260311155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Peaxi162Scf00231g00729.1 260 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 311
                               57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-8161217IPR001471AP2/ERF domain
CDDcd000182.14E-18161227No hitNo description
SuperFamilySSF541711.37E-14161227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-11162226IPR001471AP2/ERF domain
SMARTSM003802.1E-22162231IPR001471AP2/ERF domain
PROSITE profilePS5103217.174162225IPR001471AP2/ERF domain
PRINTSPR003672.7E-6163174IPR001471AP2/ERF domain
PfamPF008476.8E-10260311IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18260321IPR016177DNA-binding domain
CDDcd000183.33E-25260321No hitNo description
PROSITE profilePS5103219.045261319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-18261319IPR001471AP2/ERF domain
SMARTSM003807.9E-34261325IPR001471AP2/ERF domain
PRINTSPR003672.7E-6301321IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDNMDSSSNS ENWLGFSLSN INHNSSSSSS NLPSNSSELC LFQAAAFNSN PNTSRVVRPE  60
ETGVSGGAEP KLEDFLGGSV PSGSTASAEV CLFAGEIAPS PTTTTTTSCE YGSELKTIAA  120
SFLRSFAADH QNDSQKQLAV VALPPETPTK KAVDTFGQRT SIYRGVTRHR WTGRYEAHLW  180
DNSCRREGQS RKGRQGGYDK EDKAARAYDL AALKYWGPTT TTNFPVSNYE KELVEMKNMS  240
RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE  300
AYDIAAIKFR GLNAVTNFDI SRYDVKSIAS SNLPVGGMNN KSKTSSESAS ESSKNAEGNR  360
TDDRDLSSAT SAPFSLQAPT MVNLGFGLPI KQDASDFWSM LGYTNDQNNN GKNSSANGMF  420
YNGSPTGTTS HAQGTTLVSM NEVNNSNVLF NEEGYYQQQE GACCSTISSV PSEISMGLNS  480
NNATTTLDGS STFGNWIPNP LLSFQSTTKS SLAPFQTPIF GME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770282.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X2
SwissprotQ6PQQ31e-143AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1U7VQU80.0A0A1U7VQU8_NICSY; AP2-like ethylene-responsive transcription factor AIL5 isoform X2
STRINGXP_009770281.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-137AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]