PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00227g00108.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 358aa    MW: 39978.4 Da    PI: 6.7334
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00227g00108.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17254288135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Peaxi162Scf00227g00108.1 254 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 288
                               99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.0E-7513340IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.104.9E-15247285IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.743248284IPR000679Zinc finger, GATA-type
SMARTSM004017.3E-18248298IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-15249312No hitNo description
CDDcd002022.22E-14253300No hitNo description
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15254288IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
METPEFFQAN YYNSQFTPEK RLSDAKNGDH FVVEDLLDLP NDDCMVNDGT LDVTVTGNSD  60
SSVVDNSCNS SLSGSNHDTQ LPSDNIIGCR NFSDGQFSSE FSVPYEDLAE LEWLSNFVEE  120
SFSSNEMHKI QLIQGMKSRT DESHTHQFIP DPNRASAATN PIFKTEVSVP AKARSKRSRM  180
APGNWASRLL VVSPSTNNNT TEAIQQDMSS SSTESGIITT SIKKTGMKST PKKKAESVPN  240
NNNIMASNSE GRKCLHCATD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF  300
VLTKHSNSHR KVLEIRRQKE LTRAQQQQFF HQSMMFDVPN GDDYLIHQHI GPDFRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754473e-80HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631501.10.0PREDICTED: GATA transcription factor 9-like
RefseqXP_016491364.10.0PREDICTED: GATA transcription factor 9-like
SwissprotP697813e-90GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1S4BR450.0A0A1S4BR45_TOBAC; GATA transcription factor
STRINGXP_009631501.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-81GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]