PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00199g00056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 25787.7 Da PI: 9.8973 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.9e-19 | 100 | 151 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp kr+r +lg++ t+e+Aa a+++a+ kl+g+ Peaxi162Scf00199g00056.1 100 RYRGVRRRP-WGKFAAEIRDP---TrKRARLWLGTYETPEDAALAYDRAAYKLRGA 151 69*******.**********8...3346**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.40E-31 | 99 | 160 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-23 | 100 | 159 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-35 | 100 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 100 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-14 | 100 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.724 | 100 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-13 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-13 | 140 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MQLGHISSEF DLTIITHSIE HSSFSELSPL FNYNDSIFQT PSSNSSSTGS CTNWDQILND 60 NNIGDDTSTT PSPTSFSDQS ESLLRKPEER GVQASPNWQR YRGVRRRPWG KFAAEIRDPT 120 RKRARLWLGT YETPEDAALA YDRAAYKLRG ARASLNFPHL ISSNVREINR VKPKRRLKSI 180 EHSSSQNTAN IDTPSPKKRN VELINSLAKA NWNSHISIME RIELGTLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 99 | 163 | 4 | 68 | ATERF1 |
3gcc_A | 1e-27 | 99 | 163 | 4 | 68 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 178 | PKRRLKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ259605 | 0.0 | HQ259605.1 Petunia x hybrida ethylene-responsive-element-binding factor 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015164457.1 | 1e-55 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | E3VVS0 | 1e-97 | E3VVS0_PETHY; Ethylene-responsive-element-binding factor 11 | ||||
STRING | PGSC0003DMT400091002 | 3e-56 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-38 | ethylene-responsive element binding factor 13 |