PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00194g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 242aa MW: 27609.7 Da PI: 9.6377 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 27.8 | 8.3e-09 | 68 | 111 | 45 | 90 |
FAR1 45 kkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ e+++r+r e r+gC a++k k + +g wev ++ HnH++ Peaxi162Scf00194g00110.1 68 SN-YEERQRQRLEYRCGCMARIKFKIS-NGIWEVFEFCDGHNHPMI 111 33.478999****************99.***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.4E-6 | 70 | 111 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDVHSFNQET SQLTAKDQLN TEDHNIQNDF AFKIGMKFSS EDESYEAYNS YAVAKGFGVR 60 KGQSPLSSNY EERQRQRLEY RCGCMARIKF KISNGIWEVF EFCDGHNHPM IEENLRHFIP 120 SGRKLTSTNK SYPKVTTSIG SSRINDQVLD PIKKKGKGNG YGRLKPNIEQ KKKRAPRKTL 180 KARATQQQEQ QSSMINFELY GDSNTSFTQL LSQASANQFG GCIENQNSHI RGRNIDFSGQ 240 DN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 173 | KKKGKGNGYGRLKPNIEQKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266793.1 | 1e-50 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
STRING | XP_009628526.1 | 3e-48 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 5e-07 | FAR1-related sequence 11 |