PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00175g01033.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 322aa    MW: 37815.7 Da    PI: 9.3743
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00175g01033.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.61.5e-161192190
                      FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87
                              +fY +YA++  Fsvr+ + +ks++++ ++++ f Cskeg+r++++ k   + r++ +tr gCka   v k+++      kl+ +HnH
  Peaxi162Scf00175g01033.1 11 DFYLDYAHRNSFSVRRGRLTKSRNDNLVIDQAFGCSKEGFRSKKNFK---STRPQYVTREGCKALSYVMKKEE-----RKLVCKHNH 89
                              6*****************************************98877...999************99999944.....468899*** PP

                      FAR1 88 ela 90
                              ela
  Peaxi162Scf00175g01033.1 90 ELA 92
                              *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-131192IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.633174210IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-5185212IPR006564Zinc finger, PMZ-type
PfamPF044341.3E-6186209IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEFSPLDDSF DFYLDYAHRN SFSVRRGRLT KSRNDNLVID QAFGCSKEGF RSKKNFKSTR  60
PQYVTREGCK ALSYVMKKEE RKLVCKHNHE LATPSSQKFL RSKKKKSEAH KNLIDLLDDS  120
GVRPEPAKAY TRKIFDIFKD ELVFSQKFVY EKIEVKDGMH IYNVHEFERQ KPTYIVSLNL  180
ALKSVVCSCH KFEFIGILCR HVLMVFIKKK IHLLPACYLL DRWTRNATKE KVDDSPNVTN  240
MLRPALWFSN IMMHYIGLCE RAAWSEKYYQ FAHKKLVQLC EELDELPYGF EQDCVRGAQV  300
NKSNLELKSF NQSHEITLLD PP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883762.14e-78protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025886302.12e-74protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G3CXF46e-96A0A2G3CXF4_CAPCH; Uncharacterized protein
STRINGSolyc01g110070.1.14e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.29e-19FAR1-related sequence 3