PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00170g01230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 189aa MW: 22315 Da PI: 5.1315 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.7 | 5.1e-20 | 55 | 138 | 3 | 89 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Yn+YA GF +rk +++++ rn+e t+ f Cs+eg++ +++ +++ r+r e r+gCka++k k ++ wev ++ eHnH Peaxi162Scf00170g01230.1 55 YNSYAVAKGFGIRKGAKTYN-RNTELTRCLFLCSCEGQSPLCSNN-QERIRQRLEYRCGCKARIKFKIL-NEIWEVFEFCDEHNH 136 ****************9998.7777****************9999.99999****************99.9************** PP FAR1 88 el 89 ++ Peaxi162Scf00170g01230.1 137 PM 138 98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.8E-17 | 55 | 138 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MDTSVAANDN IDSEDHNIND QDCSELVHTM SNTNNGFDFK IGMKFSSEDE SYAAYNSYAV 60 AKGFGIRKGA KTYNRNTELT RCLFLCSCEG QSPLCSNNQE RIRQRLEYRC GCKARIKFKI 120 LNEIWEVFEF CDEHNHPMLL WRCKSESEFE LIWKQMMEEW DCGNNTWLQR LYNLREKWCP 180 AFSRFSQLD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266793.1 | 6e-67 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A1S3ZUA7 | 2e-65 | A0A1S3ZUA7_TOBAC; Uncharacterized protein | ||||
STRING | XP_009628526.1 | 2e-64 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1726 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-13 | FAR1 family protein |