PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00165g01727.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | E2F/DP | ||||||||
Protein Properties | Length: 104aa MW: 12041.8 Da PI: 5.7901 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 50.3 | 4e-16 | 4 | 56 | 33 | 71 |
E2F_TDP 33 eLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 e+++ d+kn rRR+YD+lNVL+al+++e+ +++eirwkg Peaxi162Scf00165g01727.1 4 EIIALfkatesnfsvphnesDEKNARRRVYDALNVLMALDIVER-DRKEIRWKG 56 5544445555666667777799**********************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.7E-21 | 1 | 60 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.4E-5 | 1 | 56 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.8E-13 | 2 | 56 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-11 | 12 | 57 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
VADEIIALFK ATESNFSVPH NESDEKNARR RVYDALNVLM ALDIVERDRK EIRWKGLPNS 60 DSRDMEETKM LHAELMAKIG KKAAYLKDLE EQVRSISMFF LILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 1e-14 | 1 | 63 | 34 | 95 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016542614.1 | 1e-49 | PREDICTED: transcription factor-like protein DPA isoform X1 | ||||
Refseq | XP_016542615.1 | 1e-49 | PREDICTED: transcription factor-like protein DPB isoform X2 | ||||
Swissprot | Q9FNY3 | 2e-29 | DPA_ARATH; Transcription factor-like protein DPA | ||||
TrEMBL | A0A1U8EFG7 | 3e-48 | A0A1U8EFG7_CAPAN; Transcription factor-like protein DPA | ||||
TrEMBL | A0A1U8EH07 | 3e-48 | A0A1U8EH07_CAPAN; transcription factor-like protein DPB isoform X2 | ||||
TrEMBL | A0A2G2VXG7 | 3e-48 | A0A2G2VXG7_CAPBA; Transcription factor-like protein DPA | ||||
TrEMBL | A0A2G2YQY0 | 3e-48 | A0A2G2YQY0_CAPAN; transcription factor-like protein DPA isoform X1 | ||||
STRING | Solyc09g010670.2.1 | 9e-47 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14883 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02470.3 | 7e-32 | Transcription factor DP |