PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00159g00105.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

WOX

Protein Properties

Length: 319aa MW: 36681.7 Da PI: 9.8948

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00159g00105.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.6e-21	73	132	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++t+eql++Le+++ek r+p+ae+++++A++l +++ ++V++WFqN++a+e++ Peaxi162Scf00159g00105.1 73 CRWNPTREQLHALEDMYEKgMRTPTAEQIKQIATRLrrfgKIEGKNVFYWFQNHKARERQ 132 5***************99************************************97 PP
2	Wus_type_Homeobox	111.2	5.8e-36	72	134	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + RW+Pt eQ++ Le++y++G+rtP++e+i++i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Peaxi162Scf00159g00105.1 72 SCRWNPTREQLHALEDMYEKGMRTPTAEQIKQIATRLRRFGKIEGKNVFYWFQNHKARERQKR 134 67***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.8E-6	70	137	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-13	73	138	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-9	73	132	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-18	74	132	IPR001356	Homeobox domain
CDD	cd00086	4.08E-6	74	134	No hit	No description
PROSITE profile	PS50071	11.434	78	133	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MSMVNSSSSN NHHYQELKFS NPLSVSKFKP LIPRPTIPMS PLSAPFSCGC CFQTAGNYGE 60 SKRGIEPLVM SSCRWNPTRE QLHALEDMYE KGMRTPTAEQ IKQIATRLRR FGKIEGKNVF 120 YWFQNHKARE RQKRRRLMNL IHMHAHAETL DMEHTGLSNK KTMEEAEETK QWATISGSST 180 VCEDSESINK ATVTTESVRE IGLTQYGAKG FHKQQTRIYS CNRKANKYNL SFSSNMPLNQ 240 NLFKELSGEN QILLGTWKPT SKFLARNVEN ERRENIQTLE LFPLGRGKTT GSREDSDFII 300 NKTITTPNHQ FFEFLPIMN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	136	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4681	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	3e-32	WUSCHEL related homeobox 1