PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00154g00019.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

G2-like

Protein Properties

Length: 264aa MW: 28818.2 Da PI: 6.6834

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00154g00019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.5	1.9e-30	16	66	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQ Peaxi162Scf00154g00019.1 16 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQ 66 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.25	13	73	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-28	15	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-15	15	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-22	16	66	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-8	18	66	IPR001005	SANT/Myb domain
Pfam	PF14379	4.0E-23	66	111	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDPINGGNNN PSLASKQRLR WTHELHERFV DAVAQLGGPD RATPKGVLRV MGVQGLTIYH 60 VKSHLQINEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ RLSGVLSEVP 120 GSGVTPLLAG DNGLESDNRT DPGTPAPTSE SPHVDKPAQE HASSKSLSID QSFSSQHEPL 180 TPDSGCNETF PIDSPKGERS SKKQRVGTSA AFSEADMLLP HQILESSLSS AYQQPNPVFL 240 ARDQFNHSSA LSLGSEVPKV SGSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	16	66	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	16	66	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	16	66	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	16	66	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	16	66	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	16	66	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	16	66	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	16	66	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	16	66	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	16	66	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	16	66	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	16	66	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001275151.1	1e-156	myb family transcription factor APL-like
Refseq	XP_006350320.1	1e-156	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	Q9SJW0	4e-96	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	Q3LHL3	1e-154	Q3LHL3_SOLTU; MYB-CC type transfactor
STRING	PGSC0003DMT400022661	1e-155	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-82	G2-like family protein