PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00141g01428.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 291aa    MW: 34465.9 Da    PI: 7.7418
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00141g01428.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.21.2e-2445127186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               +W+ qe+++ + +r e+++++ ++k++k lWe ++ km+++g++rsp+qCk+kw+nl +ryk +++ e +     ++++p++++l
  Peaxi162Scf00141g01428.1  45 QWSIQETRDFLMIRAELDQTFMETKRNKLLWEVIATKMKDKGYQRSPEQCKCKWKNLVTRYKGCETLEPEA--L-RQQFPFYNEL 126
                               7********************************************************************95..3.4589*****9 PP

                  trihelix  86 e 86 
                               +
  Peaxi162Scf00141g01428.1 127 Q 127
                               8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122039.45E-2344109No hitNo description
PfamPF138377.7E-2045129No hitNo description
PROSITE profilePS500907.27146102IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDPHLHHHHQ HHHQQQHQFS HQSVNIDTTS GGVNIGTSSG DRFPQWSIQE TRDFLMIRAE  60
LDQTFMETKR NKLLWEVIAT KMKDKGYQRS PEQCKCKWKN LVTRYKGCET LEPEALRQQF  120
PFYNELQAIF AARMQRMLWM EAEGASGSKK KTISQLSSDE EDENEDSEGE KVGISKKKRK  180
VVKGNVGGGS SSNSGNVVNS FKEILDDFMK QQMAMEMQWL KAYEAREEER RMKEMEWRQT  240
MEALENERLM MERRWRESEE QRRIREEARA EKRDALITAL LNKLRREDHN M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A1e-1242106367DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754487e-90HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250357.11e-154PREDICTED: trihelix transcription factor GT-3b-like
SwissprotQ9SDW02e-74TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A1J6I7M61e-153A0A1J6I7M6_NICAT; Trihelix transcription factor gt-3b
STRINGXP_009799172.11e-152(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-56Trihelix family protein