PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00131g10121.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 293aa MW: 33431.8 Da PI: 9.6469 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.1 | 6.9e-18 | 142 | 232 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k +++s+v + +l lp +f+e+h +k +++++ l de+g ++e + +k+ + l++GW+ F+ +++L++gD +vF+l+ Peaxi162Scf00131g10121.1 142 FVKSMVRSHVYSCFWLGLPGRFCEDHLLK--STVDILLVDEEGAEYEAIY--IGKRTG--LSGGWRAFALDHKLDDGDALVFELV 220 89************************888..7789***************..555544..***********************99 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + ++f +v ++r+ Peaxi162Scf00131g10121.1 221 EATKF--KVYIVRA 232 87777..8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.6E-22 | 134 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-24 | 136 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.60E-25 | 140 | 231 | No hit | No description |
SMART | SM01019 | 6.9E-24 | 142 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 142 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-16 | 142 | 232 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MEIDNSTNSY EEVRRQRVLD NKKRFEDLGI LKISKNLSDL TKSEKKSDKK SELRRVKQKT 60 NDVYMLEPRR SGRARNPVPT YRDDVDMDLP SLRKRSKFSS SWASYLARPL EEVKTASYEE 120 RAQAFKCAEK LQSNLQSDNP SFVKSMVRSH VYSCFWLGLP GRFCEDHLLK STVDILLVDE 180 EGAEYEAIYI GKRTGLSGGW RAFALDHKLD DGDALVFELV EATKFKVYIV RASHCLSGEE 240 KPGAEKGESE AEETSKSVTR KRKKSSSQSE VSTVPKEEIS VVASARRRST RIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 259 | 263 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590905.1 | 1e-176 | PREDICTED: putative B3 domain-containing protein At5g58280 | ||||
Refseq | XP_018623546.1 | 1e-176 | PREDICTED: putative B3 domain-containing protein At5g58280 | ||||
Swissprot | Q9FHB2 | 2e-70 | Y5828_ARATH; Putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | A0A1S3YNZ1 | 1e-174 | A0A1S3YNZ1_TOBAC; putative B3 domain-containing protein At5g58280 | ||||
STRING | XP_009590905.1 | 1e-176 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12510 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-70 | B3 family protein |
Publications ? help Back to Top | |||
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