PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00129g00228.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 306aa    MW: 34520.5 Da    PI: 7.1501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00129g00228.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd  lv +v+++G+g+W+++++  g++R+ k+c++rw +yl
  Peaxi162Scf00129g00228.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPNSTGLRRCSKSCRLRWTNYL 61
                              79********************************************97 PP
2Myb_DNA-binding48.71.7e-1567112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Peaxi162Scf00129g00228.1  67 RGSFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.344965IPR017930Myb domain
SuperFamilySSF466893.41E-3111108IPR009057Homeodomain-like
SMARTSM007171.2E-141363IPR001005SANT/Myb domain
PfamPF002497.1E-171461IPR001005SANT/Myb domain
CDDcd001679.69E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.5E-2565117IPR009057Homeodomain-like
PROSITE profilePS5129420.28966116IPR017930Myb domain
SMARTSM007178.3E-1666114IPR001005SANT/Myb domain
PfamPF002499.9E-1567112IPR001005SANT/Myb domain
CDDcd001673.93E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PNSTGLRRCS KSCRLRWTNY  60
LRPGIKRGSF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLE  120
AASCGSDLYS KDSCLSSLSS TSKGQWERTL QADINTAKLA LQNALSLEKP SAIQEYMATD  180
VKPKNICYPY IKQEGNNSTS TYASSAENIA KLLKQWTKSS SSTNNSENSK GSSSTQLSCN  240
YNNATNDFES ISNFESFEQS KSDQFSQATT PEESKFYGES KRELDDQVPL SVMLENWLFD  300
ENEDLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-27141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7378500.0JF737850.1 Petunia exserta isolate exse205 CAPS marker MYB60 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618496.11e-179PREDICTED: myb-related protein 306-like
RefseqXP_018631287.11e-179PREDICTED: myb-related protein 306-like
SwissprotP813921e-105MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1S3YHB71e-176A0A1S3YHB7_TOBAC; myb-related protein 306-like
STRINGXP_009618496.11e-179(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.13e-89myb domain protein 31
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]