PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00129g00057.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 208aa    MW: 23609.8 Da    PI: 6.3431
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00129g00057.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.83.2e-37111111100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklq 84 
                               aCaaCk++rrkC+++Cvla yfpa++pkkf+n+h+lFG++n++k++++l  ++++ dam+s+++e+++r + PvyG+v+ i+ l+
  Peaxi162Scf00129g00057.1  11 ACAACKYQRRKCTSQCVLASYFPADEPKKFQNAHRLFGVRNIMKIVEKLdGDDQKADAMKSVIFESDMREKFPVYGCVECIFYLR 95 
                               7************************************************445569****************************** PP

                    DUF260  85 qqleqlkaelallkee 100
                               qql+ + +el+++ ++
  Peaxi162Scf00129g00057.1  96 QQLQLALQELQYVYAQ 111
                               *********9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.64910112IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3511107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTLKSGKSKP ACAACKYQRR KCTSQCVLAS YFPADEPKKF QNAHRLFGVR NIMKIVEKLD  60
GDDQKADAMK SVIFESDMRE KFPVYGCVEC IFYLRQQLQL ALQELQYVYA QLAIYREVQR  120
DHLDASSSIS YCPSSHLNLG LSASETFTGE SNQGIGYLDC DILMNQVAHN QNPLGFLASN  180
HVGIQEQQEI SRDFESLTLI NYNLVDDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-2651156114LOB family transfactor Ramosa2.1
5ly0_B5e-2651156114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497425.13e-77PREDICTED: LOB domain-containing protein 27-like
SwissprotQ9STS61e-37LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A1S4C8G37e-76A0A1S4C8G3_TOBAC; LOB domain-containing protein 27-like
STRINGXP_009795991.15e-76(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.14e-35LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]