PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00120g01119.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 460aa    MW: 52394.6 Da    PI: 9.2777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00120g01119.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-06109132123
                               EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                               y+C  Cg++F +++ L++H +  H
  Peaxi162Scf00120g01119.1 109 YVCRVCGRRFYTNEKLVNHFKQiH 132
                               9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.71E-5105133No hitNo description
SMARTSM003550.0044109132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427109137IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10102.2E-7111128IPR029060PIN domain-like
PROSITE patternPS000280111132IPR007087Zinc finger, C2H2
CDDcd061672.89E-11122246No hitNo description
PfamPF019364.9E-7162247IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.2E-7179251IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MMKCVKVSTF IHSYARFCHF ESKCNSVRAS SVGIFWDLDN KPPKSFPPFD AATKLKKAVM  60
EFGFLKFTVA YADRHAFSYV PPLVREQRKE RKTWNSLESS GAVKVEDPYV CRVCGRRFYT  120
NEKLVNHFKQ IHECENVKRL NQIDSARGKM RVKLVAKYAM KMDKYKNAVR DVLIPKVGTV  180
SDKPQAADVA LRNHLVNVMD KRMVDCMVLV SDDSDFVEVL KEAKLRCLKT VVVGDSNDGA  240
LKRTADAAFS WQEIMMGKAK KEAGSVVGQW KDCDVLKRLE WTYDPEIEKK LYYSEVERDD  300
SDGFFSGEDE NKDVDVSVSE ESACAWWKLD SRSGTFDLSL PIFHFRNSKI ETKNQLGSRP  360
RGPKVFRVGP NWVTIAGSAL SSTLSVRLGY KLKQGMVICS QVLITLPNLM TAATITIQSP  420
CVSESGSDIY IKREVIQKPR LQLKRRDEII LEMQEQIIEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165745.10.0PREDICTED: uncharacterized protein LOC102600262 isoform X1
RefseqXP_015165746.10.0PREDICTED: uncharacterized protein LOC102600262 isoform X1
TrEMBLA0A1S3Y5R00.0A0A1S3Y5R0_TOBAC; uncharacterized protein LOC107772620
STRINGXP_009631868.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-128C2H2 family protein