PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00119g00942.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 598aa    MW: 66664.1 Da    PI: 5.5706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00119g00942.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12410454655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + ErrRR++iN++f  L ++lP       +K++K++ L +++eY+k+L+
  Peaxi162Scf00119g00942.1 410 VISERRRREKINERFMLLASMLPAG-----GKVDKISLLDETIEYLKELE 454
                               578********************98.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-3115169IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.618404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-12407458No hitNo description
SuperFamilySSF474591.03E-15407472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15409465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-15410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-10411454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MAMGCKDHNG VPDNLRKQLA FAVRGIQWSY AIFWSTTVSQ PGKTVQAAEV DEDQLGLQRT  60
EQLRELYNSL LIGEGEEDLQ PQAKRPSAAL SPEDLTDTEW YFLVCMSFVF NVGQGLPGKS  120
LARNETIWLG NAHQAESRTV VCFPYLGGVI ELGVTELVVE DPNLIQQIKI SILKVDHSII  180
PKRPNYVSSD AKNDANGVFP NLDPNVFESD ACPVEMNNSS PHDSSNGFVG NQEVEGSLMV  240
VGVIGDTSQA QSWKFTDDNM SNGVHNSLNS SDCISQNYAN CEKLSPLSSG EKETKPAPLD  300
HQEQNQKKLH FLDHQGDETQ YQSVLSTLLK SSDQLTLGPY FRNTNKRSCF SGWKNDAHIP  360
SRGTAQKLLK KVLVEVPRMH DGAIHKFSRE NRKRNSLWKP EVDDTDRSRV ISERRRREKI  420
NERFMLLASM LPAGGKVDKI SLLDETIEYL KELERRVQDL EAKSGRRPND IAEQTSDNCG  480
TSKFNDIEES LPNKRKACEM DELEPGSRNG LLKGSSGDSI VINMIDKEVS IKMRCLSSEG  540
LLFKIMEALT GLQMDCHTVQ SSNIDGILSI SIESKSNVSK TVSVGTIREA LQRVVWKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412417ERRRRE
2413418RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0205450.0AF020545.1 Petunia x hybrida bHLH transcription factor JAF13 (jaf13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275132.10.0transcription factor GLABRA 3-like
TrEMBLO649080.0O64908_PETHY; BHLH transcription factor JAF13
STRINGXP_009779730.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-140bHLH family protein