PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00106g00091.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 462aa    MW: 52239.2 Da    PI: 8.3409
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00106g00091.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0581100221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                               +C+ CgksF+++ +L  H++
  Peaxi162Scf00106g00091.1  81 VCKECGKSFPSWKSLFGHMK 100
                               6******************7 PP
2zf-C2H214.69.6e-05374396123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+Cp+C ksF++   L  H r+H
  Peaxi162Scf00106g00091.1 374 YECPICFKSFPSGQALGGHKRSH 396
                               99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.4E-71033IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2451032IPR007087Zinc finger, C2H2
SMARTSM003550.121032IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.43E-91032No hitNo description
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576672.43E-975102No hitNo description
SMARTSM003550.00380102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.13880107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-481103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-882103IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PfamPF139127.3E-11297320IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-8297319No hitNo description
SMARTSM003550.12297319IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097297324IPR007087Zinc finger, C2H2
PROSITE patternPS000280299319IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-8369396No hitNo description
Gene3DG3DSA:3.30.160.606.5E-4372395IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-12373397IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076374396IPR007087Zinc finger, C2H2
SMARTSM003550.029374396IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280376396IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEEDQELIKH VCKLCNKRFP CGRSLGGHMR SHLINDDKHT KKKILAAAYV LRENPKKNSR  60
LVSESSSELD TLLTTNQQNK VCKECGKSFP SWKSLFGHMK CHSTRISCVE EEEEKDSWNS  120
QSDSEAAAAN YRKKRSSRKM KRYIAATLTS STLTVDASSL ICLSEINEKQ QEEEVALSLI  180
MLSTDVGNLV GLNPNGTIEC SDANSQFLQT RSSNKSSKCK ETELIKLKKV RNVKASFIPT  240
EHKFLGDDNE KESTIMDNLY CTEIEIFSDQ KEINSSKKRS IEKNEYSDSN KQKINKFECT  300
TCNKTFHSYQ GLGGHKASHK RFKGSDENNS SIEIHVNLQN PVAASKNIVK NCSKDSTIIE  360
FGKANYVSKK QKVYECPICF KSFPSGQALG GHKRSHMIAE AKSNIDIEIE KPIIPEIRVL  420
LDLNMPAPVE EESSTEHIEE FKSWWKVGNI HKHEQFVGLL SN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623743.11e-145PREDICTED: zinc finger protein ZAT9-like
RefseqXP_016438592.11e-145PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S3XFD41e-143A0A1S3XFD4_TOBAC; zinc finger protein ZAT9-like
STRINGXP_009623743.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-28C2H2-like zinc finger protein