PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00095g00001.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SBP
Protein Properties Length: 781aa    MW: 87254.4 Da    PI: 6.5431
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00095g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP114.36.8e-36124201178
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                               +Cqv++Cead+se+k yh+rh+vC  ++ a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++
  Peaxi162Scf00095g00001.1 124 RCQVPDCEADISELKGYHKRHRVCLRCATASAVFLDGQSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKAT 201
                               6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-27118186IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.274122199IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-33123203IPR004333Transcription factor, SBP-box
PfamPF031101.4E-26125199IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MIPSILSGDD PVNSSLFDWS DFLEFNLDEQ QLNISFDDPV HPPGHEPEPE APQPEMPGSP  60
GSHETDPGRV RKRDPRMVCS NFLAGRIPCA CPELDEKMEE EELGDIGPGK KRARTVRAGS  120
TGARCQVPDC EADISELKGY HKRHRVCLRC ATASAVFLDG QSKRYCQQCG KFHILSDFDE  180
GKRSCRRKLE RHNNRRRRKA TDSSKTSVEK ESQLVATADD VSCDDDIVKD STCVGSQLGE  240
REILLESEGN VPICSTQGIQ NNHSDSFTAS GETQVDAEKE NSKNSNSPSY YDKSAFSSAI  300
FQWLASMPVE LEGYIRPGCT ILTVFVAMPT FRWGKLLEDP AVHLYEFIAS PGNMLRGRGS  360
FLVYLNNMVF RITKGGTSVV KVKLKGPAPK LMSIHPTCFE AGKPMEFFAC GSNLMQPRFR  420
FLVSFGGRYL GNDTSVTPSC CKSEGGSSSM EHQRLKIHVP RTEADLFGPA FVEVENESGL  480
SNFIPILIAD KDICAEMKEI QQKFCLEGSQ SAVVCSPCED SSVLCSPCEE SMSRKSEFSE  540
FMLDVAWLLR EPSSENVQLL ASAQMQRFNY LLNVLMESQS TIILKRVLSY FETMVNRNLL  600
AGITDAEMKL FLRNIHEKKY LLKERLRLKE YSMRNFGQNM QEAKLCSPIS ENHMQSVRPV  660
ADQDTEVPHK HNLDFGTICW ERMSTVPLLD AELPLRVKEQ SGKPCGFLVR KTFLTSRSLV  720
FVLTGVAVCL GLCATFVHPR KCISRNWNIP MFATTSSHET GVFRVFAKTA SQEAGQHGVE  780
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A3e-43123204485squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185197RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732960.0LC073296.1 Nicotiana tabacum NtabSPL7 mRNA for squamosa promoter binding protein NtabSPL7, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231522.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A2K9ZXI60.0A0A2K9ZXI6_PETHY; Squamosa promoter binding-like protein 7
STRINGXP_009783501.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-174squamosa promoter binding protein-like 7