PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00083g00516.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WOX
Protein Properties Length: 307aa    MW: 35110.5 Da    PI: 7.0252
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00083g00516.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-2045106257
                               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                               ++R+t+t++q+++L++l+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  Peaxi162Scf00083g00516.1  45 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 106
                               58*****************8678*************************************97 PP
2Wus_type_Homeobox114.16.8e-3744108265
         Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                               ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Peaxi162Scf00083g00516.1  44 SSTRWTPTTDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 108
                               789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-728106IPR009057Homeodomain-like
SuperFamilySSF466891.54E-1131108IPR009057Homeodomain-like
PROSITE profilePS5007110.52741107IPR001356Homeobox domain
SMARTSM003894.9E-643111IPR001356Homeobox domain
CDDcd000865.66E-746108No hitNo description
PfamPF000462.3E-1746106IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
METAQHQQNN QQHYLHQHLS IGQGTNIEDG SNKNNSSNFM CRQSSTRWTP TTDQIRILKD  60
LYYNNGVRSP TAEQIQRISA KLRQYGKIEG KNVFYWFQNH KARERQKKRL IAAATTDNTN  120
LPMQMQFQRG VWRSSADHPI HHKYTNPGVH CPSASSHGVL AVGQNGNHGY GALAMEKSFR  180
DCSISPGSSM SHHHHQNFAW AGVDPYSSTT TYPFLEKTKH FENETLEADE EQQEEDQENY  240
YYQRTTSAIE TLPLFPMHEE NISSFCNLKH QESSGGFYTE WYRADDNLAA ARASLELSLN  300
SFIGNSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4819510.0AF481951.1 Petunia x hybrida wuschel protein (WUS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251500.11e-160PREDICTED: protein WUSCHEL
SwissprotQ8LL110.0WUS_PETHY; Protein WUSCHEL
TrEMBLA0A1J6I7G31e-159A0A1J6I7G3_NICAT; Protein wuschel
STRINGXP_009792214.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-43WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]