PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00080g00064.1 | ||||||||
Common Name | EOBII | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 176aa MW: 19990.2 Da PI: 5.2719 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 1e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Peaxi162Scf00080g00064.1 15 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.069 | 10 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.19E-22 | 16 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.18E-11 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-8 | 66 | 96 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MDKKPCNSQD AEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKSAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLIM ELHAKWGNRT RIQKHIKQAE TMNGQAASSE QNDHQEACTS 120 QMSNGPNDNT IDQTYSPTSY SGNVDTFQAG PNFLTEANDN MWSMEDIWSM QLLNGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-14 | 10 | 89 | 22 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU360893 | 1e-147 | EU360893.1 Petunia x hybrida Myb-like transcription factor EOBII mRNA, complete cds. | |||
GenBank | EU374207 | 1e-147 | EU374207.1 Petunia x hybrida MYB-like protein NON1 mRNA, complete cds. | |||
GenBank | JF793919 | 1e-147 | JF793919.1 Petunia axillaris MYB transcription factor EOBII (EOBII) mRNA, complete cds. | |||
GenBank | JF793920 | 1e-147 | JF793920.1 Petunia exserta MYB transcription factor EOBII (EOBII) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618404.1 | 1e-102 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | P81391 | 2e-83 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | E0CJS3 | 1e-124 | E0CJS3_PETHY; MYB-like protein NON1 | ||||
TrEMBL | F5CSS2 | 1e-124 | F5CSS2_PETAX; MYB transcription factor EOBII | ||||
TrEMBL | F5CSS3 | 1e-124 | F5CSS3_9SOLA; MYB transcription factor EOBII | ||||
STRING | XP_009618404.1 | 1e-101 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 2e-65 | myb domain protein 21 |
Publications ? help Back to Top | |||
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