PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00079g02119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 429aa MW: 46847 Da PI: 6.3213 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 202 | 251 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Peaxi162Scf00079g02119.1 202 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 251 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-14 | 202 | 251 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-36 | 202 | 265 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 202 | 260 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.712 | 202 | 259 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 202 | 260 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 203 | 214 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.84E-15 | 210 | 261 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 225 | 241 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MCLLKVANQG ESGEYVRYSE AGDSETTTTS TTAAATTTTT AISQPNESQS FEEMIQQQIQ 60 EETEYLMSSS ATPMFSGYSQ TREMSAMVTA LTHVVSGRRP GDWSYGGGGG SPQTSTYSSS 120 SSGSWAGQKR RRDQEEISIT AAEQVQRVYG GFGESSSSVK PEEATSVMVA APPTTTISTT 180 TTTAAQPAAE VGGEETGERR RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAEAAAR 240 AYDEAALRFR GNRAKLNFPE NARLLPQQQQ QRRQQQTASS VVSQLPLMAS LTTPSPFFQS 300 YNQPQQQQQP PFQSSEMVRD YWEYSQLLQD PGDFHGQQQQ QSSSLLEQMF LSSSLGVLHS 360 HTFPSSSSSA LGNTSAASST SYPLFLSAQQ SPFFRPQTHQ HNQGGSSSSS NFPGPFWTSS 420 SHYPPSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 201 | 259 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 202 | ERRRRY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC171635 | 5e-55 | KC171635.1 Tamarix hispida ethylene response factor 9 (ERF9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363442.1 | 1e-152 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | M1A7F4 | 1e-150 | M1A7F4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400016306 | 1e-151 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4322 | 21 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 2e-16 | ERF family protein |