PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00076g00929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GATA | ||||||||
Protein Properties | Length: 255aa MW: 28866.8 Da PI: 8.9491 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.5 | 1.9e-18 | 182 | 215 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C + kTp+WR gp g+ktLCnaCG++y++ + Peaxi162Scf00076g00929.1 182 CSHCLAQKTPQWRAGPLGPKTLCNACGVRYKSGR 215 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.176 | 176 | 212 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.4E-14 | 176 | 226 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.57E-15 | 178 | 239 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.9E-14 | 179 | 213 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.59E-12 | 181 | 232 | No hit | No description |
Pfam | PF00320 | 4.5E-16 | 182 | 215 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 182 | 207 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDYCHDFILS EDLHSDYHQK CQPEQLLDNT LDDLFSRHTT TEGDVSLEWL SVFVEDCLTS 60 TGSCLPPPAH EASSSSPMKK NKLTPSGFLH KFVIPGKARS KRKRRTPLAQ KTKNRTFFCS 120 WPKIHKNQVG VVPFLDPPLL QQAYWLADSE LIIMPENNEE SKNSNVKKED DGNNGLQQGR 180 RCSHCLAQKT PQWRAGPLGP KTLCNACGVR YKSGRLFPEY RPAKSPTFLS YKHSNSHKKV 240 LEMRSMANSI TSSSD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622844.1 | 7e-80 | GATA transcription factor 5-like | ||||
Refseq | XP_021622846.1 | 7e-80 | GATA transcription factor 5-like | ||||
TrEMBL | A0A251KNK5 | 2e-78 | A0A251KNK5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_013059m | 3e-79 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15155 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 6e-36 | GATA transcription factor 12 |