PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00073g02335.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 299aa    MW: 34224.1 Da    PI: 6.7879
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00073g02335.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY728e-23130190259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dg++WrKYGqK++ +s++pr Y+rCt++   +C+++k+v+  +e+p + ++tY g+H+++
  Peaxi162Scf00073g02335.1 130 EDGCAWRKYGQKNILNSKYPRCYFRCTHKydqDCKATKQVQIIQENPIIYHTTYFGNHTCN 190
                               8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-23118190IPR003657WRKY domain
PROSITE profilePS5081117.098124192IPR003657WRKY domain
SuperFamilySSF1182901.06E-23124190IPR003657WRKY domain
SMARTSM007748.1E-36129191IPR003657WRKY domain
PfamPF031062.1E-22130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEKPLEECHE NPRKRLINEI LVEGKGFATQ LQTLIQQPII AHHGSVSADE LLVKIWSSFT  60
QAITEVNTLG SRGLFQNEEV DQSDSSDRKS KDSSSEFSRK KNKLVGKDRR GCYKRRKTSN  120
SLIRESATIE DGCAWRKYGQ KNILNSKYPR CYFRCTHKYD QDCKATKQVQ IIQENPIIYH  180
TTYFGNHTCN SGQIPKHEII SSQEFNNSLV KSPHFEIKPK VLSSETHDST VKPEEESNKV  240
QSDVSSTTMD SNLWQDFMPS SPSAHSTMAD HSSYFDQVIT SSDMEEFGKF GDFHFEEFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20129189868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198116RKKNKLVGKDRRGCYKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601871.11e-135PREDICTED: probable WRKY transcription factor 70
SwissprotK4BIZ91e-100WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A2U3T9U91e-133A0A2U3T9U9_TOBAC; WRKY1 transcription factor
STRINGXP_009601871.11e-134(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-37WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]