PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00047g01542.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 270aa    MW: 29813.6 Da    PI: 8.1124
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00047g01542.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-19190224135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Peaxi162Scf00047g01542.1 190 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 224
                               *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-18184238IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.149184220IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-16186247No hitNo description
Gene3DG3DSA:3.30.50.106.2E-15187222IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.87E-15189237No hitNo description
PfamPF003202.4E-17190224IPR000679Zinc finger, GATA-type
PROSITE patternPS003440190215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKMEALDPSA VACFLDDEDD LLNFSLQDDD DDNNYQNTPA SSSSNPLVSS LLPHHHPECV  60
EEELEWLSNK DAFPAVEFGI LSDNPGIMFD HHSPVSVLEN SSSTSNSSGN GITNGNAYMS  120
CCGSLKVPVN YPVRARSKRR RRRRRGGLTD VPIEHCMSVN PPIFKNAKQR QPLLSLPMNS  180
AKSSSIGRRC QHCGVDKTPQ WRAGPMGPKT LCNACGVRYK SGRLLPEYRP ANSPTFSADV  240
HSNSHRKVLE MRKQKVGVGG MMIHEACGYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135144RSKRRRRRRR
2137142KRRRRR
3138144RRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076900.0AB107690.1 Nicotiana tabacum AGP2 mRNA for AG-motif binding protein-2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312074.11e-148GATA transcription factor 1-like
TrEMBLQ76DY21e-146Q76DY2_TOBAC; AG-motif binding protein-2
STRINGXP_009767386.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-44GATA transcription factor 1