PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00047g00524.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 355aa MW: 39543.2 Da PI: 8.6071 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9e-20 | 192 | 240 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g Peaxi162Scf00047g00524.1 192 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAIAYDTAAYMLRG 240 8******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.87E-31 | 190 | 250 | No hit | No description |
PROSITE profile | PS51032 | 22.418 | 191 | 248 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-37 | 191 | 254 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-31 | 191 | 249 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 191 | 249 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-13 | 192 | 240 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 192 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 214 | 230 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
DHEASAVNFN TKFSEFLPLF HQNGSSLSSS TSHYHQDQGN NNNIPFNNFL ESFHQVPDHQ 60 TCTSSSSTSL SSNYPTLGLY LQEPSILEIS KKAAESLSKS KNHCKSSAAL FPMSSIGESQ 120 IQHQQAAATS STTNWLKMNQ TITNCTTKGF SDYWLSTTKT QPMKVTGKRL LHQKANSSSS 180 SSSTNVSQGK LFRGVRQRHW GKWVAEIRLP RNRTRVWLGT FDTAEEAAIA YDTAAYMLRG 240 DYAHLNFPHL KNQLKANSMS GNTAALLEAK IRAISQAKKV SDHESPAQTL LTNDSTIFKN 300 VTHNQEMVNC DNMEIKVLKN QERLLSETID GVQLSRMPSL DMDMIWDALL VSDSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 187 | 258 | 1 | 68 | ATERF1 |
3gcc_A | 6e-22 | 187 | 258 | 1 | 68 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607801.1 | 1e-157 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
Refseq | XP_016454529.1 | 1e-157 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
TrEMBL | A0A1S3YQN9 | 1e-155 | A0A1S3YQN9_TOBAC; ethylene-responsive transcription factor ERF062-like | ||||
STRING | XP_009607801.1 | 1e-156 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 3e-60 | ERF family protein |