PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00046g00823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 185aa MW: 20852.9 Da PI: 8.7048 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 188.7 | 2.9e-58 | 6 | 164 | 4 | 167 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 + +seq+Cy+ C+fCn +lavsvP + lf +vtvrCGhCt+l svn+a a q l+ +s ++++++ ++ + e ++ ++ Peaxi162Scf00046g00823.1 6 DVASEQLCYIPCSFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSNSSASSQDFHHVQVPNYTAPEYRMDFGSST 90 5689**************************************************9999988888888888888888888888887 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 + ++++ + + +++n++e v v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aakn a ++h Peaxi162Scf00046g00823.1 91 KCNNMRMTMRTPITNNTQERV-----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNGAEKCPMH 164 777777777777777776665.....59*******************************************99887777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.9E-62 | 8 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.06E-6 | 103 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MASCIDVASE QLCYIPCSFC NIVLAVSVPC SNLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 NSSASSQDFH HVQVPNYTAP EYRMDFGSST KCNNMRMTMR TPITNNTQER VVNRPPEKRQ 120 RVPSAYNQFI KEEIQRIKAN NPDISHREAF STAAKNGAEK CPMHKLLRKI KKSSVYGEYF 180 LQAVC |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ667744 | 1e-139 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622268.1 | 2e-97 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 7e-68 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S3Y3Q8 | 5e-96 | A0A1S3Y3Q8_TOBAC; axial regulator YABBY 5-like | ||||
STRING | XP_009622268.1 | 8e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-64 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|