PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00044g01613.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 325aa    MW: 37256 Da    PI: 4.4355
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00044g01613.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-1859112356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++  +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Peaxi162Scf00044g01613.1  59 KKRRLRVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 112
                               45578899*********************************************9 PP
2HD-ZIP_I/II125.62.2e-4058149192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl  +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktk lE+dy++Lk+++d+lk++ e+L++++e
  Peaxi162Scf00044g01613.1  58 EKKRRLRVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKTLERDYNVLKANFDSLKQNYESLQHDNE 142
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               +L +el 
  Peaxi162Scf00044g01613.1 143 ALLKELC 149
                               **99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-1844114IPR009057Homeodomain-like
PROSITE profilePS5007117.13554114IPR001356Homeobox domain
SMARTSM003893.6E-1657118IPR001356Homeobox domain
CDDcd000864.71E-1559114No hitNo description
PfamPF000461.9E-1559112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-1966113IPR009057Homeodomain-like
PRINTSPR000319.3E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000319.3E-694110IPR000047Helix-turn-helix motif
PfamPF021831.9E-14114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKRVRSTDSL GAPVMSMCQN TTDDNHQWNS QVYSRDYQSM LEGLDDEVCI EESGNVSEKK  60
RRLRVDQVKA LEKNFEVENK LEPERKVKLA QELGLQPRQV AVWFQNRRAR WKTKTLERDY  120
NVLKANFDSL KQNYESLQHD NEALLKELCE LKSKLHGENI ESKVAVKEEA IESESHDDKD  180
IEQSKPNNST CLGKCEDDDN AELNFVESFK GETCIMNDTI FADFKDGSSD SDSSAILNED  240
NGAFLISNSS SSANSTLNCF QFLDSNAKSI FGDAHKVNYQ PQFVKMEEHN FFSGEESCST  300
LFSDEQAPSL QWYCPEEWNW KDTPN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588928.11e-169PREDICTED: homeobox-leucine zipper protein ATHB-6-like
RefseqXP_016500042.11e-169PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1S4CFT41e-168A0A1S4CFT4_TOBAC; homeobox-leucine zipper protein ATHB-6-like
STRINGXP_009588928.11e-169(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.16e-61homeobox protein 16