PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00038g01818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 37500.5 Da PI: 5.2973 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.1e-13 | 12 | 57 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd l++ vk++G+++W++I ++ ++Rt+k+c++rw + Peaxi162Scf00038g01818.1 12 KGPWKEEEDAVLIKHVKKYGPRDWSSIRSKGLLHRTGKSCRLRWVN 57 79*************************888779***********87 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.9e-14 | 68 | 107 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE+ +++ +q+G++ W++Ia +++ gRt++++k++w Peaxi162Scf00038g01818.1 68 KFSAEEETTVIELQAQFGNK-WARIATYLP-GRTDNDVKNFW 107 79******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.67 | 7 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 10 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-13 | 11 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.36E-12 | 14 | 59 | No hit | No description |
Pfam | PF13921 | 1.7E-13 | 15 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-18 | 61 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.282 | 64 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-12 | 65 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.83E-10 | 68 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
AHVMMDDILI KKGPWKEEED AVLIKHVKKY GPRDWSSIRS KGLLHRTGKS CRLRWVNKLR 60 PNLKNGVKFS AEEETTVIEL QAQFGNKWAR IATYLPGRTD NDVKNFWSSR QKRLAKILRN 120 SASQPSTPQK NNNKEALALQ KVPSVEEPKL SSPAEERSLT MSQCCSSSYM NNSDTINMVP 180 LPELENSTSL PFEPNLLQFE FTPNDKNYQY IETQMSLSFP QIPLQTDLGH PLGSQELPMK 240 LEETDLLDFF GQLSTASDIG NVQVPLVPLC SGPDKSSEIV VKREMDSPLT QDSFIDDLPM 300 DMFDLIDPLP SPSDWWNSDL SISERKKGNC N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 10 | 113 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 4e-61 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630342.1 | 1e-169 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_016497849.1 | 1e-169 | PREDICTED: transcription factor GAMYB-like | ||||
TrEMBL | A0A1S4CA66 | 1e-168 | A0A1S4CA66_TOBAC; transcription factor GAMYB-like | ||||
STRING | XP_009630342.1 | 1e-168 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4207 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 3e-79 | MYB family protein |