PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00038g00845.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 279aa    MW: 30044.7 Da    PI: 4.3598
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00038g00845.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.6e-17231265135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Peaxi162Scf00038g00845.1 231 CLHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 265
                               99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-15225275IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.413225261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-13227262IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.09E-12227275No hitNo description
CDDcd002022.51E-13230277No hitNo description
PfamPF003205.4E-15231265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEAPEFFVNG YFSNAVDEQN NNNNNNNNNN FTVDDLLDFP KEDDVMTDAF FDSITGNNSA  60
DSSTVTVVDS CNSSVSGGDG NFNGNLSCRS FTDAPFPSSE LCVPYDDLAE LEWLSNFVEE  120
SFSSDDIQNL QLIPVANINS TTNTTTDSSS SATTGTTSPP AFPADTSVPG KARSKRSRNA  180
PCDWSSRLQL LLSPATSSSE SNNSANNTSF TGKVIKAPKK RESVETPGRK CLHCASEKTP  240
QWRTGPLGPK TLCNACGVRY KSGRLVPEYR PAASPTQLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628152.11e-155PREDICTED: GATA transcription factor 12-like
RefseqXP_016470527.11e-155PREDICTED: GATA transcription factor 12-like
TrEMBLA0A1S4A1G81e-153A0A1S4A1G8_TOBAC; GATA transcription factor
STRINGXP_009628152.11e-154(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-47GATA transcription factor 12