PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g00288.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 277aa    MW: 29929.4 Da    PI: 7.876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g00288.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-05103125123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC+ C+ksFs+   L  H  +H
  Peaxi162Scf00016g00288.1 103 YKCSVCDKSFSSYQALGGHKASH 125
                               9***********99999998887 PP
2zf-C2H213.30.00025168190123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F++   L  H r+H
  Peaxi162Scf00016g00288.1 168 HVCSICHKAFPSGQALGGHKRRH 190
                               79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-4100125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.28E-9102125No hitNo description
SMARTSM003550.0034103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263103125IPR007087Zinc finger, C2H2
PfamPF139125.4E-14103127IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576673.28E-9163190No hitNo description
PROSITE profilePS501579.66168195IPR007087Zinc finger, C2H2
SMARTSM003550.057168190IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-12168192IPR007087Zinc finger, C2H2
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MALEALKSPT AATPTLPPRY EDQVDMSNLD SWVKGKRSKR PRIETPPSEE EYLALCLIML  60
ARSGNGTTPS SIPGSTDTTT ISKEPEKKNR DVAPVYQETE QSYKCSVCDK SFSSYQALGG  120
HKASHRKITT IATTALLDDN NNNPTTSNST NGNVVNNIST LNPSGRSHVC SICHKAFPSG  180
QALGGHKRRH YEGKLGGNNN NNHRDGGGHS GSVVTTSDGG ASTHTLRDFD LNMLPPSPEL  240
QLGLSIDCGL KSQQVPIEQE VESPMPLKKP RLLFSMD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPETZFDB10.0D26083.1 Petunia hybrida gene for zinc-finger DNA binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240274.11e-136PREDICTED: zinc finger protein ZAT10-like
TrEMBLQ408960.0Q40896_PETHY; Zinc-finger DNA binding protein
STRINGXP_009772006.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-48salt tolerance zinc finger