PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00016g00238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | DBB | ||||||||
Protein Properties | Length: 208aa MW: 23347.2 Da PI: 6.33 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.4 | 1.2e-07 | 4 | 35 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++++e++ +C ++ lC++C + H+ Peaxi162Scf00016g00238.1 4 QCDVCDKEEASVYCSADEATLCKSCDYQVHHA 35 7***************************9743 PP | |||||||
2 | zf-B_box | 30.2 | 9e-10 | 55 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++e ++ lfC++++ lC++C l++H+ Ht Peaxi162Scf00016g00238.1 55 SPRCDICQERRALLFCKEDRAILCKECDLQIHQAneHT 92 689*****************************767765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.978 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.61E-4 | 3 | 33 | No hit | No description |
Pfam | PF00643 | 6.7E-6 | 4 | 34 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.0E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.466 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.8E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.4E-8 | 55 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.45E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MKIQCDVCDK EEASVYCSAD EATLCKSCDY QVHHANKLAS KHLRFSLIHP SFKDSPRCDI 60 CQERRALLFC KEDRAILCKE CDLQIHQANE HTQKHNRFLL TGVQLSSAVT SNHNQTSSSI 120 STTGSHKLAR SSGSTSGIKS CSTIESTPNF QVDYVQEGSV STSSISEYLI ETLPGWQVED 180 FLEYPCSSPY GKVFVDYTLL LYDLTYIH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 4e-66 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072091.1 | 1e-107 | B-box zinc finger protein 20 isoform X1 | ||||
Swissprot | Q0IGM7 | 5e-65 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 6e-65 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2G3BW13 | 1e-104 | A0A2G3BW13_CAPCH; B-box zinc finger protein 20 | ||||
STRING | Solyc01g110180.2.1 | 1e-101 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 8e-66 | salt tolerance homolog2 |