PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00013g00725.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 24186.8 Da    PI: 10.3736
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00013g00725.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.91.1e-22944136
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaeva 36
                              krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva
  Peaxi162Scf00013g00725.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVA 44
                              79*********************************7 PP
2K-box86.17.3e-296513431100
                     K-box  31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                               L    Rh++GedL+sLs+keLq+LeqqL++slk+iRs+Kn+l++e+i+elqkk k+lqe+n+ L+kk++e
  Peaxi162Scf00013g00725.1  65 LIIAPRHYMGEDLDSLSMKELQNLEQQLDSSLKHIRSRKNQLMHESISELQKKDKSLQEQNNLLSKKVKE 134
                               55667**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-24155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.469144IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-21144IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-181044IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-203859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.75748138IPR002487Transcription factor, K-box
PfamPF014862.0E-2458132IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRGRVQMKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVAWRGFLK DMKDTHMLRG  60
SLFLLIIAPR HYMGEDLDSL SMKELQNLEQ QLDSSLKHIR SRKNQLMHES ISELQKKDKS  120
LQEQNNLLSK KVKEREKELA QQTQWEQQNN HHEINSSSSF VLPQPLDSPH LGYTFHPSPI  180
ILCMMQGSIP EHSRQWRSRR SFTAATC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1767821e-169AF176782.1 Petunia x hybrida MADS box transcription factor (PFG) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773500.12e-82agamous-like MADS-box protein AGL8 homolog isoform X3
SwissprotQ424293e-76AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLQ9SBQ13e-89Q9SBQ1_PETHY; MADS box transcription factor
STRINGPGSC0003DMT4000104511e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.15e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]