PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00013g00437.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 336aa MW: 38363.3 Da PI: 7.5239

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00013g00437.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.8	8.3e-44	19	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL kkv ++++ + +i evd++k+ePwdLp ++dkky+tg r+nrat++gyWka Peaxi162Scf00013g00437.1 19 LPPGFRFHPTDEELITHYLSKKVVETNFFA-IAIGEVDLNKIEPWDLP--------------CKDKKYPTGLRTNRATAAGYWKA 88 79**********************9877.78**********9..............5799*************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkd+e+++ +++lvg+kktLvfykgrapkgekt+Wv+heyrle Peaxi162Scf00013g00437.1 89 TGKDREIFR-GKSLVGMKKTLVFYKGRAPKGEKTNWVIHEYRLE 131 *****.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-52	15	155	IPR003441	NAC domain
PROSITE profile	PS51005	47.594	19	155	IPR003441	NAC domain
Pfam	PF02365	4.0E-24	20	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MENYTGIVYK DDHDQQMELP PGFRFHPTDE ELITHYLSKK VVETNFFAIA IGEVDLNKIE 60 PWDLPCKDKK YPTGLRTNRA TAAGYWKATG KDREIFRGKS LVGMKKTLVF YKGRAPKGEK 120 TNWVIHEYRL EGRSSLQNLP KTAKNEWVIC RVFQKSYGGK KIHISGLVKL DYDENEMGNS 180 FLPPLTDSSP YICRIKPTPS QSSHVHCFSN YFTAQKSQEN MTTYFNNSPF PVLSNPIQNY 240 PSSSLHNTFS CNQMVPTQGT FTNQDPTILR TILENYGEIF KKEEVALSQE TGLSNDMNTE 300 ISSTVSNLDM GRRNLENQEP PSAMVGQQGF DCLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-43	16	161	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-43	16	161	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-43	16	161	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-43	16	161	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-42	16	161	17	174	NAC domain-containing protein 19
3swm_B	1e-42	16	161	17	174	NAC domain-containing protein 19
3swm_C	1e-42	16	161	17	174	NAC domain-containing protein 19
3swm_D	1e-42	16	161	17	174	NAC domain-containing protein 19
3swp_A	1e-42	16	161	17	174	NAC domain-containing protein 19
3swp_B	1e-42	16	161	17	174	NAC domain-containing protein 19
3swp_C	1e-42	16	161	17	174	NAC domain-containing protein 19
3swp_D	1e-42	16	161	17	174	NAC domain-containing protein 19
4dul_A	9e-43	16	161	14	171	NAC domain-containing protein 19
4dul_B	9e-43	16	161	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-73	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587074.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_018622413.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-114	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3XIL9	1e-180	A0A1S3XIL9_TOBAC; NAC domain-containing protein 100-like isoform X1
TrEMBL	A0A1U7YD76	1e-180	A0A1U7YD76_NICSY; NAC domain-containing protein 100 isoform X1
STRING	XP_009587074.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-116	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]