PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00009g00422.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 330aa    MW: 37027.9 Da    PI: 4.6655
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00009g00422.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-1993146356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++t++q++ Le+ Fe+++++  e++ +LAk+lgL+ rq+ +WFqNrRa++k
  Peaxi162Scf00009g00422.1  93 KKRRLTDNQVQFLEKSFEEENKLEPERKVKLAKELGLQPRQIAIWFQNRRARWK 146
                               56689************************************************9 PP
2HD-ZIP_I/II130.46.9e-4292183192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl+++qv++LE+sFeee+kLeperKv+la+eLglqprq+a+WFqnrRAR+ktkqlEkdy+aL+++yd+lk++ ++L ke+e
  Peaxi162Scf00009g00422.1  92 EKKRRLTDNQVQFLEKSFEEENKLEPERKVKLAKELGLQPRQIAIWFQNRRARWKTKQLEKDYDALRKRYDTLKSDYNNLLKEKE 176
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               +Lr+e+ 
  Peaxi162Scf00009g00422.1 177 NLRAEVL 183
                               ***9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-1982150IPR009057Homeodomain-like
PROSITE profilePS5007117.83188148IPR001356Homeobox domain
SMARTSM003893.1E-1991152IPR001356Homeobox domain
PfamPF000461.6E-1693146IPR001356Homeobox domain
CDDcd000864.16E-1993149No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2094155IPR009057Homeodomain-like
PRINTSPR000311.1E-5119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5128144IPR000047Helix-turn-helix motif
PfamPF021831.7E-14148189IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MMAPGMLYGA GAGASNFDGV LFQKHITTSS TTKEHLGSLF VPGPSSSSFL GSSSMVSFGG  60
ANGGKKSRSF FDSFNQEDDE ADELGEYFHQ AEKKRRLTDN QVQFLEKSFE EENKLEPERK  120
VKLAKELGLQ PRQIAIWFQN RRARWKTKQL EKDYDALRKR YDTLKSDYNN LLKEKENLRA  180
EVLQLNDKLL LKEEENGALS DIPKHSDALP KATMADPISR IEISQVSAGV LNQQQEDLSS  240
SKSDVFDSES PRYTDGVHST LIDQGDSAYV FEPEQSSDIS QDDDENFSKS MLSTASLLAK  300
AEDGYRVTSS NLSYYGFPVE EDHGIGFWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773747.11e-175PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_016461905.11e-175PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1S3ZBS71e-174A0A1S3ZBS7_TOBAC; homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1U7W1391e-174A0A1U7W139_NICSY; homeobox-leucine zipper protein HAT5-like
STRINGXP_009773747.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-40homeobox 1