PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00003g01526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | AP2 | ||||||||
Protein Properties | Length: 726aa MW: 82729 Da PI: 8.4898 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.2e-20 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++g Peaxi162Scf00003g01526.1 114 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 163 59*******.**********82....48************************998 PP | |||||||
2 | AP2 | 62.6 | 8.5e-20 | 352 | 401 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aaka+++a+ +++g Peaxi162Scf00003g01526.1 352 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAAKAYDKAAIEFRG 401 59*******.**********82....48************************998 PP | |||||||
3 | AP2 | 62.4 | 9.7e-20 | 590 | 639 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++g Peaxi162Scf00003g01526.1 590 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 639 59*******.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.698 | 114 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-31 | 114 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-21 | 114 | 171 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-13 | 114 | 163 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.17E-32 | 114 | 170 | No hit | No description |
SMART | SM00380 | 7.5E-37 | 114 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 352 | 409 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 352 | 409 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-13 | 352 | 401 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.41E-21 | 352 | 408 | No hit | No description |
SMART | SM00380 | 2.8E-36 | 352 | 415 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.474 | 352 | 409 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.72E-33 | 590 | 647 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-31 | 590 | 647 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-21 | 590 | 647 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-13 | 590 | 639 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-37 | 590 | 653 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.829 | 590 | 647 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MQRSITKRIA KQEETISINN NILQPKLTNE QEFSIMVAAL TNVITGTYND VTQQFQFATP 60 STSMSSTFEP PMFRVPTEPE PCQFCKIKGC LGCNYFGTEE NKITKIVGKK KKKNYRGVRQ 120 RPWGKWAAEI RDPRRAARVW LGTFNTAEDA ARAYDKAAIE FRGPRAKINF SFADYTSILN 180 QNNSSMSHQN KQEVQLQQGY TNFCTTSQEE EEIWDQLILS DNDIQDLSML DFNGILTASK 240 SITKRTKQEE TISINNNILQ PKLTNEQEFS IMVAALSNVI TGTYNDVTQQ FQFATPSTSM 300 SSTFEPPMFR VPTEQEPCQF CKIKGCLGCN YFGTTTEENK ITKIVGKKKK KNYRGVRQRP 360 WGKWAAEIRD PRRAARVWLG TFNTAEDAAK AYDKAAIEFR GPRAKINFSF ADYTSILNQN 420 NSSMSHQNKQ EVQLQQGYTN FCTTSQEEEE IWDQLILSDN DIQDLRMLDF NGYLTASKSI 480 TKRAKQDETT SINNNILQPK LTNEQEFSIM VAALTNVITG AYNNVTQPFQ FATPSTSMSS 540 TFEPPMFRVP TEPEPCQFCK IKGCLGCNYF DTTTEENKST KIVGKKKKKN YRGVRQRPWG 600 KWAAEIRDPR RAARVWLGTF NTAEDAARAY DKAAIEFRGP RAKLNFAFAD YTSIQQQNIS 660 TSANVSPQKQ QEPIVQLQHG INTDHIGTGK LEEEFWDQLI SDNEFQDLSM MDFNAETSDG 720 RNTRSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-23 | 111 | 646 | 2 | 62 | ATERF1 |
3gcc_A | 3e-23 | 111 | 646 | 2 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 583 | 589 | GKKKKKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274022 | 2e-80 | AB274022.1 Nicotiana tabacum WRAF2 mRNA for wound-responsive AP2 like factor 2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9SZ06 | 4e-35 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
STRING | XP_009762423.1 | 1e-100 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 9e-35 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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