PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00001g00352.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 252aa    MW: 28635.8 Da    PI: 6.9389
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00001g00352.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-1975123355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  ++k++g
  Peaxi162Scf00001g00352.1  75 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDSEARKIRG 123
                               9*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3274132IPR001471AP2/ERF domain
PROSITE profilePS5103223.85474131IPR001471AP2/ERF domain
SMARTSM003809.5E-3974137IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2274132IPR016177DNA-binding domain
CDDcd000181.32E-3275132No hitNo description
PfamPF008474.6E-1275123IPR001471AP2/ERF domain
PRINTSPR003675.8E-127586IPR001471AP2/ERF domain
PRINTSPR003675.8E-1297113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MCGGAIIADL IPRRDRRASS TDLWPTSADF WPNASFSKPN TSSLSTQKVP VTPKRAQPTT  60
EQIEKSKKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDSEARK  120
IRGKKAKVNF PNEDNHYSTH PQPQRNIGYD SYDTCYNSHE VNNSYGIIEN TEPVNNDQNC  180
QLKEQEKEEN EVEKLSEELM AYESLMKFYE IPYVDGQSVA ATMNPTAEAM GGGSMDLWSF  240
DDVSPPVSPA HL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-22751351576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2595980.0HQ259598.1 Petunia x hybrida ethylene-responsive-element-binding factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475776.11e-124PREDICTED: ethylene-responsive transcription factor ERF071
TrEMBLE3VVR30.0E3VVR3_PETHY; Ethylene-responsive-element-binding factor 4
STRINGXP_009608570.11e-123(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.19e-44ERF family protein