PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00001g00352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 28635.8 Da PI: 6.9389 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.3e-19 | 75 | 123 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ ++k++g Peaxi162Scf00001g00352.1 75 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDSEARKIRG 123 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 74 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.854 | 74 | 131 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-39 | 74 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-22 | 74 | 132 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.32E-32 | 75 | 132 | No hit | No description |
Pfam | PF00847 | 4.6E-12 | 75 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-12 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-12 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MCGGAIIADL IPRRDRRASS TDLWPTSADF WPNASFSKPN TSSLSTQKVP VTPKRAQPTT 60 EQIEKSKKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDSEARK 120 IRGKKAKVNF PNEDNHYSTH PQPQRNIGYD SYDTCYNSHE VNNSYGIIEN TEPVNNDQNC 180 QLKEQEKEEN EVEKLSEELM AYESLMKFYE IPYVDGQSVA ATMNPTAEAM GGGSMDLWSF 240 DDVSPPVSPA HL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-22 | 75 | 135 | 15 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ259598 | 0.0 | HQ259598.1 Petunia x hybrida ethylene-responsive-element-binding factor 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016475776.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | E3VVR3 | 0.0 | E3VVR3_PETHY; Ethylene-responsive-element-binding factor 4 | ||||
STRING | XP_009608570.1 | 1e-123 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7118 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 9e-44 | ERF family protein |