PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00001g00283.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 757aa    MW: 86810.6 Da    PI: 6.5035
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00001g00283.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.51.4e-2059152190
                      FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 
                               +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w++t +
  Peaxi162Scf00001g00283.1  59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSEDGKLHRNRKSSRCGCQAFMRIVKRAdlnVPEWRITGF 143
                               6***************999887455667********************9*******************99888676789****** PP

                      FAR1  82 eleHnHela 90 
                               ++ HnHel+
  Peaxi162Scf00001g00283.1 144 SNVHNHELS 152
                               *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1759152IPR004330FAR1 DNA binding domain
PfamPF105515.1E-23275366IPR018289MULE transposase domain
PROSITE profilePS5096610.2550586IPR007527Zinc finger, SWIM-type
PfamPF044346.9E-8558584IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-6561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MPEITGIAKE TSDNGTDSSQ DDIGTVEEMP EESILSRQTS VSLVPFIGQR FISQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL HRNRKSSRCG  120
CQAFMRIVKR ADLNVPEWRI TGFSNVHNHE LSKSTEMQLL PAYCTISADD KSRICMFAKA  180
GMSVRQMMRL MELEKGVKLG CLPFTEVDVR NLLQSFRNVD QDNDPIDLLK MCKEMKDKDP  240
NFKYDYKIDC NNRLEHIAWS YASSMRLYEA FHDAIVFDTT HRLDTYDMIL GIWIGVDNHG  300
MHCFFGCVLL RDENLQSFSW ALKTFLGFMN GKAPGTILTD QNLWLKEAIA TEIPRAKHAF  360
CIWHIISRFS DWFSTLLGSH YDNWKAEFHR IYNLHSIEEY EEGWKDMVET YRLDGNKHIV  420
SLYALRSYWA LPFLRSYFFA GMTSTFQSET INTYIQRFLS AQSALDNFVE QVARVLDAKG  480
QAGEHKVQRK VQKVPLKTGS PIESQCATVL TPYAFSKLQD ELVLAPQYAS LMVDESYFIV  540
RHHTEMDGGY KVLWVPHDEF ISCSCHTFEF TGILCRHVLR VLSTNNCFHI PDQYLPMRWR  600
EYNSSLAKPT LFTLPSDHTG KVHLLQSMIS TLITESVETE EHLNVVCDEV STVLSRIKGF  660
PTASNGGNAI AYESPSDSLI LAEVEDSEGN GQSFTCNPHE CIILAKLKER GSRDELDRYR  720
KRRRFCIPCC GQYGHDANDC PMMEGEDLDE DRLGFLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1719723RKRRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599705.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2G2ZVM30.0A0A2G2ZVM3_CAPAN; Protein FAR1-RELATED SEQUENCE 11
STRINGXP_009599705.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135351416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]