PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_9965g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

BBR-BPC

Protein Properties

Length: 353aa MW: 38917.3 Da PI: 8.4665

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_9965g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	177.8	1.5e-54	21	306	18	273
GAGA_bind 18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.............salpvgvqv 101 + lk+ l+l+s +erda irer+ a++ekk a+ae++ a++qrd+a+a+r++a++erd +++al+ ++++ + a+p+ +q+ MA_9965g0010 21 KCLKDYAMLRLISAKTERDAVIRERDKAIAEKKVAIAEKEAAYAQRDAAFAQRDEAIMERDAAFAALENARDERNrgwqaykaqlaqmAASPHLTQI 117 678999999*********************************************************99998887888888888776444444443 PP GAGA_bind 102 ...lsgtksidslqqlse.............pqledsave.....lreeeklealpieeaaeea.kekkkkkkrqrakkpkekkakkkkkksekskk 176 +++ + + ++ + + + + e e +++ +i++ ++++ +++kk+++ ++ p+++k+ +kk++ + + MA_9965g0010 118 gacSRDPRIFQAINIH-HdctygiganefpaL--TTGTSElgpvlECEAALKSSSEIVTREPKKgRRSKKNSQDVDGSIPLVPKSPSKKRRVRGQ-- 209 1113333444444443.358888887777442..3222221021122333334444544444430444555555566778888877777744444.. PP GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273 ++++++ e + k++ + + + + ++P+P CsCtGa + CY+WGnGGWqSaCCtt +S+yPLP++++++g R grKmS gaf+klL +a MA_9965g0010 210 QSETPNGVEVGSEGKDCENNSAKSCVVYNPSMPIPYCSCTGANQPCYRWGNGGWQSACCTTMMSMYPLPMNPNKKGYRFPGRKMSAGAFQKLLLPVA 306 3333332244556666777777777788889***********************************************************97666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.3E-33	1	303	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.1E-47	28	307	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDDEDRKGVH PALNDEPLDE KCLKDYAMLR LISAKTERDA VIRERDKAIA EKKVAIAEKE 60 AAYAQRDAAF AQRDEAIMER DAAFAALENA RDERNRGWQA YKAQLAQMAA SPHLTQIGAC 120 SRDPRIFQAI NIHHDCTYGI GANEFPALTT GTSELGPVLE CEAALKSSSE IVTREPKKGR 180 RSKKNSQDVD GSIPLVPKSP SKKRRVRGQQ SETPNGVEVG SEGKDCENNS AKSCVVYNPS 240 MPIPYCSCTG ANQPCYRWGN GGWQSACCTT MMSMYPLPMN PNKKGYRFPG RKMSAGAFQK 300 LLLPVAAAAT RPSLRRTCPC LVLHFSNLLL LYFDQSAMLL YSGSPQVLNY LGD

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDDEDRKGVH PALNDEPLDE KCLKDYAMLR LISAKTERDA VIRERDKAIA EKKVAIAEKE  60
AAYAQRDAAF AQRDEAIMER DAAFAALENA RDERNRGWQA YKAQLAQMAA SPHLTQIGAC  120
SRDPRIFQAI NIHHDCTYGI GANEFPALTT GTSELGPVLE CEAALKSSSE IVTREPKKGR  180
RSKKNSQDVD GSIPLVPKSP SKKRRVRGQQ SETPNGVEVG SEGKDCENNS AKSCVVYNPS  240
MPIPYCSCTG ANQPCYRWGN GGWQSACCTT MMSMYPLPMN PNKKGYRFPG RKMSAGAFQK  300
LLLPVAAAAT RPSLRRTCPC LVLHFSNLLL LYFDQSAMLL YSGSPQVLNY LGD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF678431	0.0	EF678431.1 Picea sitchensis clone WS02920_N03 unknown mRNA.
GenBank	FJ982282	0.0	FJ982282.1 Picea sitchensis GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LRA8	0.0	B8LRA8_PICSI; GAGA-binding transcriptional activator

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17514	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	4e-29	basic pentacysteine 6