PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9427942g0010 | ||||||||
Common Name | WOX3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WOX | ||||||||
Protein Properties | Length: 159aa MW: 18412.8 Da PI: 8.3312 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.8 | 2.8e-21 | 19 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ MA_9427942g0010 19 TRWNPTPEQLMILEEMYRGgIRTPNADQIQQITAHLalygKIEGKNVFYWFQNHKARDRQ 78 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 121.4 | 3.7e-39 | 17 | 79 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a+tRW+PtpeQ++iLee+y+ G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk MA_9427942g0010 17 ATTRWNPTPEQLMILEEMYRGGIRTPNADQIQQITAHLALYGKIEGKNVFYWFQNHKARDRQK 79 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.252 | 14 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.65E-11 | 16 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.2E-6 | 16 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.83E-4 | 19 | 79 | No hit | No description |
Pfam | PF00046 | 6.2E-19 | 19 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-8 | 19 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
VVSRARIRVP TAMPQPATTR WNPTPEQLMI LEEMYRGGIR TPNADQIQQI TAHLALYGKI 60 EGKNVFYWFQ NHKARDRQKL RRKMESKQEP KRSTFEDESA LDINNGWRLS TLDSRDECGN 120 SFNCGSVEEF DCEIDTVHEI SRRARPLKTL ELFPTCSGL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 83 | KLRRKM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM882158 | 0.0 | FM882158.1 Pinus sylvestris mRNA for putative wuschel homeobox protein WOX3 (wox3 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006828230.1 | 2e-42 | WUSCHEL-related homeobox 3 | ||||
Refseq | XP_008783634.1 | 3e-42 | WUSCHEL-related homeobox 3B-like | ||||
TrEMBL | R9R8B4 | 1e-116 | R9R8B4_PICAB; WUSCHEL homeobox protein WOX3 | ||||
STRING | Aquca_046_00011.1 | 8e-43 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5580 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 6e-41 | WOX family protein |
Publications ? help Back to Top | |||
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