PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9412105g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21934.6 Da PI: 8.9555 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.6 | 7.6e-42 | 43 | 142 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq ++l++el MA_9412105g0010 43 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLLEVPESQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQAQSLQSEL 136 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e MA_9412105g0010 137 NSVRAE 142 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.416 | 42 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-41 | 43 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSRERENFEN FSRRASFKQL ADADRMGRRQ ILGPPGTLNT ITPCAACKLL RRRCAQECPF 60 SPYFSPHEPQ KFASVHKVFG ASNVSKMLLE VPESQRADAA NSLVYEANVR LRDPVYGCMG 120 AISSLQQQAQ SLQSELNSVR AEIMRYKFRS EAAAMHHQPP GQSSHQASMM PSSSAVYSQG 180 SASTDYTAMN DHSNYYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-45 | 35 | 146 | 3 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-45 | 35 | 146 | 3 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102233 | 0.0 | BT102233.1 Picea glauca clone GQ0171_H05 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821727.1 | 3e-90 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 1e-74 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 3e-74 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A3S3NG72 | 5e-89 | A0A3S3NG72_9MAGN; LOB domain-containing protein 15 | ||||
STRING | XP_007137607.1 | 4e-88 | (Phaseolus vulgaris) | ||||
STRING | cassava4.1_031813m | 3e-88 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-68 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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