PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_9284799g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 63aa MW: 7194.47 Da PI: 10.8478 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.9 | 4e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtfskRrng+lKKA+ELSvLCdaev +i+fs++gklye+ MA_9284799g0010 9 KRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFG 58 79**********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.0E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.917 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-30 | 3 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.38E-39 | 3 | 60 | No hit | No description |
PRINTS | PR00404 | 6.3E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-29 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MVRGKTQMKR IENTTSRQVT FSKRRNGLLK KAYELSVLCD AEVGLIVFSP RGKLYEFGSP 60 RCV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 4e-18 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_B | 4e-18 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_C | 4e-18 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_D | 4e-18 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
6byy_A | 7e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 7e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 7e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 7e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 7e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 7e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 7e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 7e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102045 | 4e-97 | BT102045.1 Picea glauca clone GQ0164_P01 mRNA sequence. | |||
GenBank | BT123900 | 4e-97 | BT123900.1 Picea sitchensis clone WS04718_J01 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018681699.1 | 1e-35 | PREDICTED: agamous-like MADS-box protein AGL14 | ||||
Swissprot | Q9XJ60 | 4e-33 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A0K0M6Y8 | 5e-35 | A0A0K0M6Y8_PINTB; DAL4 | ||||
STRING | GSMUA_Achr5P20280_001 | 6e-35 | (Musa acuminata) | ||||
STRING | XP_006440498.1 | 7e-35 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 3e-35 | AGAMOUS-like 20 |