PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_922309g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 22858.3 Da PI: 7.8859 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 116 | 167 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GV ++ +g++ AeIrdp + k +r++lg+f+taeeAa a+++a+ +++g+ MA_922309g0010 116 PYRGVKERP-WGKFGAEIRDPAK--KGARVWLGTFDTAEEAALAYDRAAYRIRGA 167 59***9777.**********954..34*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 116 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-32 | 116 | 180 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.709 | 116 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 117 | 175 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.6E-11 | 117 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.28E-30 | 117 | 174 | No hit | No description |
PRINTS | PR00367 | 8.2E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
TTMDPAGEVN TSMNINMRML ELIRHHLLEV DDEIDIAEGN YPSFSFCPTG SGTGDCFLAS 60 NTDSCQNSSA RSTSEGNENE FTQQHYPSSY CYSYSVNAKP HEKENTGEKK QSRRRPYRGV 120 KERPWGKFGA EIRDPAKKGA RVWLGTFDTA EEAALAYDRA AYRIRGARAM LNFPLAIASN 180 SEDGSAVGHM AQKRKRRRGS CGGTLD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-31 | 117 | 179 | 6 | 68 | ATERF1 |
3gcc_A | 1e-31 | 117 | 179 | 6 | 68 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 191 | 197 | QKRKRRR |
2 | 192 | 197 | KRKRRR |
3 | 193 | 197 | RKRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | O80337 | 5e-32 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | A0A023ZYJ7 | 6e-75 | A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17500.1 | 1e-23 | ethylene responsive element binding factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|