PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_91369g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 260aa MW: 28277.1 Da PI: 7.4338 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.8 | 7e-28 | 2 | 98 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C+++C+l+p++ +++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +Pv+G+vg+ +++++ +q+ + MA_91369g0010 2 SCNGCRVLRKGCSESCILRPCLhwistAESQANATIFLAKFYGRAGLTNLISNGPEHLRPAIFRSLLYEACGRMVNPVHGSVGLAWSGNWAECQAGV 98 6*********************9999778899**********************************************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.209 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-22 | 2 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLHWISTAE SQANATIFLA KFYGRAGLTN LISNGPEHLR 60 PAIFRSLLYE ACGRMVNPVH GSVGLAWSGN WAECQAGVDS ILRGSFLAVP QGNFMFPDRE 120 NIVPMKPMAV PGLRRSVKAR GRLKGLWHAK PKRKEGELAV ICNHIHSSSI SDDGGDVTNA 180 VQNSADNGIF NEKFIERYST SNSGQEHDEL LAADEAEMEY CHDLCNLKAT QPEAAYKTVG 240 LELTLGSQCS TSPAHNLSAV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT100987 | 0.0 | BT100987.1 Picea glauca clone GQ0062_D21 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007044347.1 | 2e-60 | PREDICTED: LOB domain-containing protein 42 | ||||
TrEMBL | A0A061ED63 | 4e-59 | A0A061ED63_THECC; LOB domain-containing protein 42 | ||||
STRING | EOY00179 | 7e-60 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-59 | LOB domain-containing protein 42 |