PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9115341g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 377aa    MW: 42861.5 Da    PI: 6.9069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9115341g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.6e-10276324355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +Le  ++Y++sLq
  MA_9115341g0010 276 NSHSLAERVRREKISERMKVLQDLVPGC----NKVTGKALVLENIINYVQSLQ 324
                      58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-16270335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-9271328No hitNo description
PROSITE profilePS5088815.294273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15273333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-7276324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-10279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MATFSGDYEA FITDSDRIRS QISDFQDKKS QYDITKYPAH WQYLEFSPED GLISSDYCAS  60
ITTQTSNPRS VLNSDAADNG LLHWHESTIE SLGLQEIIDP IMISEEQIAK ALYGSSVGER  120
AVYPETKSIV SEEREDYDAN RLHEHTSGHA DYHYVMTDQN MCVDKPLTYR GKGKGHTAPG  180
NMNKRKTDQY ANGSFMETYV QVSAQKGPVK KSRGDRHKSS QSSSIYNDHE QNSNPKSDVI  240
RGESSELLTN SVKDEPKNKS QKDYIHLRSR RGQATNSHSL AERVRREKIS ERMKVLQDLV  300
PGCNKVTGKA LVLENIINYV QSLQSQVEIL SVKLTSVLSR CHFDLQINGH PSKEHWSNVR  360
ETEDFHGSLM HYKQHKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1234230.0BT123423.1 Picea sitchensis clone WS04713_A13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AB251e-160D5AB25_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.16e-42BIG PETAL P